LiFlow: A workflow automation system for reproducible simulation studies / Kuklin E., Sozykin A., Ushenin K., Byordov D. // CEUR Workshop Proceedings. - 2017. - V. 1839, l. . - P. 208-217.

ISSN:
16130073
Type:
Conference Paper
Abstract:
Simulation of living systems often requires numerous computational experiments on the same model for different parameter values. This paper describes the design of a user-friendly workflow automation system LiFlow for simulation of living systems, which is capable of conducting such a large series of computational experiments on supercomputers. The system provides a convenient interface for preparing input experimental data, executing the experiments on a supercomputer, and storing experimental results in a storage system. A distinctive feature of LiFlow is its simplicity and usability-The system is intended to be used by researchers in mathematical biology and biophysics without extensive knowledge in parallel computing. The paper provides examples of the use of the LiFlow system for simulation of the human heart left ventricle.
Author keywords:
Computational experiment reproducibility; Computational workflow; Living system simulation; Parallel computing systems; Supercomputers
Index keywords:
Biological systems; Digital storage; Supercomputers; Automation systems; Computational experiment; Computational workflow; Living systems; Mathematical biology; Parallel computing system; Reproducibil
DOI:
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Link https://www.scopus.com/inward/record.uri?eid=2-s2.0-85020553151&partnerID=40&md5=31f09750515340cbf0f526d0a04c9819
Affiliations Krasovskii Institute of Mathematics and Mechanics, Ekaterinburg, Russian Federation; Institute of Immunology and Physiology UrB RAS, Ekaterinburg, Russian Federation; Ural Federal University, Ekaterinburg, Russian Federation
Author Keywords Computational experiment reproducibility; Computational workflow; Living system simulation; Parallel computing systems; Supercomputers
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Editors Milosevic H.Shokin Y.I.Esipov D.V.
Publisher CEUR-WS
Conference name 2016 International Conference Mathematical and Information Technologies, MIT 2016
Conference date 28 August 2016 through 5 September 2016
Conference code 127940
Language of Original Document English
Abbreviated Source Title CEUR Workshop Proc.
Source Scopus